RELION
Note
The documentation here, while meant for the old hlrn-tmod software stack, still applies reasonably well to the same software packages in the other software stacks.
REgularised LIkelihood OptimisatioN is a stand-alone computer program that employs an empirical Bayesian approach to refinement of (multiple) 3D reconstructions or 2D class averages in electron cryo-microscopy(cryo-EM)
Description
Read more on RELION home page.
For manual and user-guide visit the RELION tutorial page.
Modules
| Version | Installation Path | modulefile | compiler | comment |
|---|---|---|---|---|
| 3.0 | /sw/chem/relion/3.0/skl/gcc/openmpi | relion/3.0-gcc | gcc.8.2-openmpi.3.1.2 | GUI enabled |
| 3.0-beta | /sw/chem/relion/3.0beta/skl | relion/3.0-beta | intel-impi-2018 |
The following versions are available via the unified GWDG Modules.
List of Modules
| Node Type | Module Names | Requirements (Load First) |
|---|---|---|
| Grete (GPU) | relion/4.0.1 relion/5.0.0 | gcc/13.2.0 openmpi/5.0.7 |
| Emmy (CPU) | relion/3.1.3 relion/4.0.1 relion/5.0.0 | gcc/11.5.0 openmpi/4.1.7 |
To use RELION in HLRN
#Load the modulefile
module load relion/3.0-gcc
#Launching GUI
relion_maingui